Globally Optimal Cell Tracking using Integer Programming

We propose a novel approach to automatically tracking cell populations in time-lapse images. To account for cell occlusions and overlaps, we introduce a robust method that generates an over-complete set of competing detection hypotheses. We then perform detection and tracking simultaneously on these hypotheses by solving to optimality an integer program with only one type of flow variables. This eliminates the need for heuristics to handle missed detections due to occlusions and complex morphology. We demonstrate the effectiveness of our approach on a range of challenging sequences consisting of clumped cells and show that it outperforms state-of-the-art techniques.Comment: Engin T\"uretken and Xinchao Wang contributed equally to this wor

Heterotic Strings on Generalized Calabi-Yau Manifolds and Kaehler Moduli Stabilization

Compactifications of heterotic string theory on Generalized Calabi-Yau manifolds have been expected to give the same type of flexibility that type IIB compactifications on Calabi-Yau orientifolds have. In this note we generalize the work done on half-flat manifolds by other authors, to show how flux quantization occurs in the general case, by starting with a basis of harmonic forms and then extending it. However it turns out that only the axions associated with the non-harmonic directions in the space of Kaehler moduli, can be stabilized by the geometric (torsion) terms. Also we argue that there are no supersymmetric extrema of the potential when the second (and fourth) cohomology groups on the manifold are non-trivial. We suggest that threshold corrections to the classical gauge coupling function could solve these problems.Comment: 9 page

Axillary bud viability and dry matter production of Poa ligularis in Patagonian grasslands

Poa ligularis Nees is one of the dominant perennial grass species in Patagonian grasslands. This is the first field study which investigated the effects of defoliation frequency on its number of viable axillary buds, and subsequent dry matter production during one growing season. Experiments were arranged in a randomized complete block design. Treatments included one defoliation height (10 cm), from one to five times a year, and undefoliated controls. Bud respiratory activity was examined usingthe tetrazolium test and the vital stain Evan's blue. At the end of the growing season, plants that have been defoliated more than three times showed significatively (p<0.05) lower number of respiratory active buds than unclipped controls. A high defoliation frequency increased bud death in stem bases. Both defoliated and undefoliated plants produced more (p<0.05) axillary buds at the periphery than at their center. Defoliation treatments increased shoot weight by 13.4% on average compared with undefoliated controls, but reduced in by 10% the average number of metabolically active axillary buds. This indicates that this reduction, however, was not high enough to constrain dry matter production.It appears that Poa ligularis could tolerate moderate grazing frequency and intensity without compromising its potential regrowth capacity. Longer-term studies of the effects of defoliation on dry matter production and bud metabolic activity are needed to understand the cumulative effects of grazing of P. ligularis in natural grasslands.Poa ligularis Nees es una de las especies de gramíneas perennes dominantes en los pastizales naturales de la Patagonia. Este es el primer estudio que investigó los efectos de la frequencia de defoliación sobre su número de yemas axilares viables, y subsiguiente producción de materia seca durante una estación de crecimiento. Los estudios se efectuaron utilizando un diseño de bloques completamente al azar. Los tratamientos incluyeron una altura de defoliación (10 cm), de una a cinco veces por año, además de controles no defoliados. La actividad respiratoria de las yemas fue examinada usando el método del tetrazolio y el colorante vital azul de Evans.Hacia el final de la estación de crecimiento, las plantas que habían sido defoliadas más de tres veces mostraron un número significativamente menor (p<0.05) de yemas con actividad respiratoria que los controles no defoliados. Una alta frecuencia de defoliación incrementó la muerte de yemas en las bases de tallos. Todas las plantas- defoliadas o no, produjeron más (p<0.05) yemas axilares en su periferia que en su centro. La defoliación incrementó 13.4% el peso de los tallos en promedio, pero redujo en 10% el número promedio de yemas axilares metabólicamente activas. Esto indica que esta reducción , sin embargo, no fue suficiente como para limitar la producción de materia seca. Parece que P. ligularis toleraría una frecuencia e intensidad moderada de pastoreo sin comprometer su capacidad potencial de rebrote. Se necesitan estudios a más largo plazo de los efectos de la defoliación en la producción de materia seca y actividad metabólica de las yemas para entender los efectos acumulativos del pastoreo de Poa ligularis en los pastizales naturales.Fil: Souto, Cintia Paola. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Becker, G. F.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Patagonia Norte. Estación Experimental Agropecuaria San Carlos de Bariloche; ArgentinaFil: Siffredi, G. L.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Patagonia Norte. Estación Experimental Agropecuaria San Carlos de Bariloche; ArgentinaFil: Busso, Carlos Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Sterberg, M.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Patagonia Norte. Estación Experimental Agropecuaria San Carlos de Bariloche; Argentin

Heterotic String Compactifications on Half-flat Manifolds II

In this paper, we continue the analysis of heterotic string compactifications on half-flat mirror manifolds by including the 10-dimensional gauge fields. It is argued, that the heterotic Bianchi identity is solved by a variant of the standard embedding. Then, the resulting gauge group in four dimensions is still E6 despite the fact that the Levi-Civita connection has SO(6) holonomy. We derive the associated four-dimensional effective theories including matter field terms for such compactifications. The results are also extended to more general manifolds with SU(3) structure.Comment: 31 page

Yield gap analysis and assessment of climate-induced yield trends of irrigated rice in selected provinces of the Philippines

This study describes a combined empirical/modeling approach to assess the possible impact of climate variability on rice production in the Philippines. We collated climate data of the last two decades (1985-2002) as well as yield statistics of six provinces of the Philippines, selected along a North-South gradient. Data from the climate information system of NASA were used as input parameters of the model ORYZA2000 to determine potential yields and, in the next steps, the yield gaps defined as the difference between potential and actual yields. Both simulated and actual yields of irrigated rice varied strongly between years. However, no climate-driven trends were apparent and the variability in actual yields showed no correlation with climatic parameters. The observed variation in simulated yields was attributable to seasonal variations in climate (dry/wet season) and to climatic differences between provinces and agro-ecological zones. The actual yield variation between provinces was not related to differences in the climatic yield potential but rather to soil and management factors. The resulting yield gap was largest in remote and infrastructurally disfavored provinces (low external input use) with a high production potential (high solar radiation and day-night temperature differences). In turn, the yield gap was lowest in central provinces with good market access but with a relatively low climatic yield potential. We conclude that neither long-term trends nor the variability of the climate can explain current rice yield trends and that agroecological, seasonal, and management effects are over-riding any possible climatic variations. On the other hand the lack of a climate-driven trend in the present situation may be superseded by ongoing climate change in the future

Targeting multiple rescatterings through VUV-controlled high-order-harmonic generation

We theoretically investigate the use of an isolated attosecond vacuum ultraviolet (VUV) pulse to control the emergence of multiple wave-packet rescatterings in the process of high-harmonic generation (HHG). Through numerical solution of the time-dependent Schrödinger equation for a He atom driven by 0.8 – 2.0 − μm light, we establish the relationship between evidence of multiple rescatterings in HHG and the time delay between the VUV and infrared pulses. We find features of multiple rescatterings present in both the time and frequency domains of emitted HHG, and demonstrate the use of VUV-induced multiple rescatterings for generating trains of ultrashort light pulses.M.M. acknowledges support by the National Science Foundation Graduate Research Fellowship under Grant No. DGE 1144083 and was also supported via a grant awarded by the U.S. Department of Energy Office of Basic Energy Science, Chemical Sciences, Geosciences and Biosciences Division, Atomic, Molecular, and Optical Sciences Program (Grant No. DE-FG02-09ER16103). C.H.G. acknowledges support by a Marie Curie International Outgoing Fellowship within the EU Seventh Framework Programme for Research and Technological Development (2007-2013), under REA Grant No. 328334. A.J.B. was supported by the U.S. National Science Foundation under Grants No. PHY-1125844 and No. PHY-1068706. A.B. acknowledges support by the U.S. Department of Energy Office of Basic Energy Science, Chemical Sciences, Geosciences and Biosciences Division, Atomic, Molecular, and Optical Sciences Program (Grant No. DE-FG02-09ER16103). This work utilized the Janus supercomputer, which is supported by the U.S. National Science Foundation (Award No. CNS- 0821794) and the University of Colorado Boulde

Trends, Opportunities, and Challenges in Using Restricted Device Authentication in Fog Computing

The few resources available on devices restricted in Internet of Things are an important issue when we think about security. In this perspective, our work proposes a agile systematic review literature on works involving the Internet of Things, authentication, and Fog Computing. As a result, related works, opportunities, and challenges found at these areas' intersections were brought, supporting other researchers and developers who work in these areas

Chiral Zeromodes on Vortex-type Intersecting Heterotic Five-branes

We solve the gaugino Dirac equation on a smeared intersecting five-brane solution in E_8\times E_8 heterotic string theory to search for localized chiral zeromodes on the intersection. The background is chosen to depend on the full two-dimensional overall transverse coordinates to the branes. Under some appropriate boundary conditions, we compute the complete spectrum of zeromodes to find that, among infinite towers of Fourier modes, there exist only three localized normalizable zeromodes, one of which has opposite chirality to the other two. This agrees with the result previously obtained in the domain-wall type solution, supporting the claim that there exists one net chiral zeromode localized on the heterotic five-brane system.Comment: 10 pages, 2 figure